PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019107-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 598aa    MW: 66324.1 Da    PI: 7.0538
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019107-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12419464454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  NNU_019107-RA 419 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAIAYINEL 464
                    799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.5E-5666244IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.111415464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-18418488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-14418469No hitNo description
Gene3DG3DSA:4.10.280.102.8E-18419485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-10419464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-16421470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MTEYRLPVMN LWTDDNASMM EAFMASDLSQ FSWAPTASAS TTTTATDPSR TTNQSQTSMF  60
FNQDTLQQRL QTLIEGARES WTYAIFWQSS VDMSGASLLG WGDGYYKGEE DKMKRRVTVS  120
PAEQEHRKKV LRELNSLISG VPASADEPVD EEVTDTEWFF LVSMTQSFIN GSGLPGQAFF  180
ASSPVWLAGG ERLASSSCER ARQGQIFGLR TMVCIPSANG VVELGSTELI FHSSDLMNKV  240
RVLFNFNNNN SDMGPWSTTI SVQTQHQNHH HQQQTQSFFT RELNFSEFGY EGSSARNGSA  300
QSCKPESGEI LNYGERKKNS CSANGNLFSN NSQQFVADDK KKRSASSKGG NNEGMLSFTS  360
GVVLPSSCVV KSSGGTADSD QSDLDASVRE AESSRVGEPE KRPRKRGRKP ANGREEPLNH  420
VEAERQRREK LNQRFYALRA VVPNVSKMDK ASLLGDAIAY INELRTKLQA AESNKEGLQS  480
QVDSLKKELA ASRYSGSPPQ ADQDLKISNH QVSKLLDMEI EVKILGWEAM IRIQCNKKNH  540
PAARLMTALK ELDLDVHYAS VSVVKDLMIQ QATVKMSSRV YTQEQLRIAL SSKVGDAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A6e-79612474195Transcription factor MYC3
4rs9_A6e-79612474195Transcription factor MYC3
4rqw_B6e-79612474195Transcription factor MYC3
4rqw_A6e-79612474195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1400408KRPRKRGRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002519814.10.0PREDICTED: transcription factor MYC2
SwissprotO496870.0MYC4_ARATH; Transcription factor MYC4
TrEMBLB9S1E90.0B9S1E9_RICCO; Transcription factor AtMYC2, putative
STRINGSolyc08g076930.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.11e-178bHLH family protein